add_date                Add date/time column to data.frame
bloom_prediction        Bloom prediction from chilling and forcing
                        requirements, assumed to be fulfilled strictly
                        in sequence
bloom_prediction2       Bloom prediction from chilling and forcing
                        requirements, assumed to be fulfilled strictly
                        in sequence - version 2
bloom_prediction3       Bloom prediction from chilling and forcing
                        requirements, assumed to be fulfilled strictly
                        in sequence - version 3
bootstrap.phenologyFit
                        bootstrap.phenologyFit
c.bootstrap_phenologyFit
                        Concatenate bootstrap_phenologyfit objects
california_stations     Weather stations in California
check_temperature_record
                        Check a daily or hourly temperature record for
                        compliance with chillR's standards
check_temperature_scenario
                        Check temperature scenario for consistency
chifull                 chifull
chile_agromet2chillR    Convert a weather file downloaded from the
                        Chilean Agromet website to chillR format
chilling                Calculation of chilling and heat from hourly
                        temperature records
Chilling_Hours          Calculation of cumulative chill according to
                        the Chilling Hours Model
chilling_hourtable      Add chilling and heat accumulation to table of
                        hourly temperatures
chillR-package          chillR: statistical methods for phenology
                        analysis in temperate fruit trees
ChuineCF                ChuineCF
ChuineFstar             ChuineFstar
color_bar_maker         Make color scheme for bar plots in outputs of
                        the chillR package
daily_chill             Calculation of daily chill and heat
                        accumulation
Date2YEARMODA           Date to YEARMODA conversion
daylength               Compute sunrise and sunset times, and daylength
Dynamic_Model           Dynamic_Model
DynModel_driver         DynModel_driver
Empirical_daily_temperature_curve
                        Empirical daily temperature curve
Empirical_hourly_temperatures
                        Empirical daily temperature prediction
extract_differences_between_characters
                        Identify shared leading or trailing character
                        strings
extract_temperatures_from_grids
                        Extract temperature information from gridded
                        dataset
filter_temperatures     Quality filter for temperature records
fix_weather             Weather data fixer and quality checker
GDD                     Calculation of cumulative heat according to the
                        Growing Degree Day Model
GDH                     Calculation of cumulative heat according to the
                        Growing Degree Hours Model
GDH_model               Calculation of cumulative heat according to the
                        Growing Degree Hours Model (alternative
                        function name)
genSeason               Generate Seasons
genSeasonList           genSeasonList
get_last_date           Get the last date from a phenology record
get_weather             Download weather data from online database
getClimateWizard_scenarios
                        Extract mutltiple scenarios from the
                        ClimateWizard database
getClimateWizardData    Extract climate data from the ClimateWizard
                        database
handle_cimis            List, download or convert to chillR format data
                        from the CIMIS database
handle_dwd              List, download or convert to chillR format data
                        from the Deutscher Wetterdienst database
handle_dwd_old          List, download or convert to chillR format data
                        from the Deutscher Wetterdienst database
handle_gsod             List, download or convert to chillR format data
                        from the Global Summary of the Day database
handle_gsod_old         Deprecated version of handle_gsod. List,
                        download or convert to chillR format data from
                        the Global Summary of the Day database
handle_ucipm            List, download or convert to chillR format data
                        from the UCIPM database
identify_common_string
                        Identify shared leading or trailing character
                        strings
interpolate_gaps        Linear gap interpolation
interpolate_gaps_hourly
                        Interpolate gaps in hourly temperature records
JDay_count              Count days between two Julian dates
JDay_earlier            Check whether a Julian date is before or after
                        another one
JDay_later              Check whether a Julian date is after another
                        one
KA_bloom                Cherry bloom data for Klein-Altendorf, Germany
KA_weather              Weather data for Klein-Altendorf, Germany
leap_year               Leap year finder
load_ClimateWizard_scenarios
                        Load climate wizard scenarios
load_temperature_scenarios
                        Load temperature scenarios
make_all_day_table      Fill in missing days in incomplete time series
make_california_UCIPM_station_list
                        Makes a list of the UC IPM weather stations
make_chill_plot         Plot climate metrics over time
make_climate_scenario   Make climate scenario
make_climate_scenario_from_files
                        Make climate scenario from multiple saved csv
                        files
make_daily_chill_figures
                        Produce image of daily chill and heat
                        accumulation
make_daily_chill_plot   Plot daily climate metric accumulation
                        throughout the year
make_daily_chill_plot2
                        Plot daily climate metric accumulation
                        throughout the year (2)
make_hourly_temps       Make hourly temperature record from daily data
make_JDay               Make Julian Day in dataframe
make_multi_pheno_trend_plot
                        Combine multiple phenology contour plots in one
                        figure
make_pheno_trend_plot   Make image showing phenology response to
                        temperatures during two phases
ordered_climate_list    Sort files in a folder, so that numbers are in
                        ascending sequence
patch_daily_temperatures
                        Patch gaps in daily weather records
patch_daily_temps       Patch gaps in daily weather records - updated
PhenoFlex               PhenoFlex
PhenoFlex_fixedDynModelGAUSSwrapper
                        PhenoFlex_fixedDynModelGAUSSwrapper
PhenoFlex_fixedDynModelwrapper
                        PhenoFlex_fixedDynModelwrapper
PhenoFlex_GAUSSwrapper
                        PhenoFlex_GAUSSwrapper
PhenoFlex_GDHwrapper    PhenoFlex_GDHwrapper
phenologyFit            phenologyFit
phenologyFitter         phenologyFitter
plot_climate_scenarios
                        Plot multiple chilling scenario groups (or for
                        other metrics)
plot_climateWizard_scenarios
                        Plot mutltiple ClimateWizard scenarios obtained
                        with getClimateWizard_scenarios
plot_phenology_trends   Visualizing phenology responses to temperatures
                        during two phases
plot_PLS                Output of Partial Least Squares analysis
                        results of phenology vs. daily mean
                        temperatures
plot_scenarios          Plot historic and future scenarios for
                        climate-related metrics ('ggplot2' version)
plot.bootstrap_phenologyFit
                        plot bootstrap_phenologyFit
plot.phenologyFit       plot phenologyFit
PLS_chill_force         Partial Least Squares analysis of phenology vs.
                        accumulated daily chill and heat
PLS_pheno               Partial Least Squares analysis of phenology vs.
                        daily mean temperatures
predict.bootstrap_phenologyFit
                        predict bootstrap_phenologyFit
predict.phenologyFit    predict phenologyFit
print.phenologyFit      print phenologyFit
read_tab                Read csv table regardless of whether it is a
                        true csv or the French type
RMSEP                   Root Mean Square Error of Prediction (RMSEP)
RPD                     Residual Prediction Deviation (RPD)
RPIQ                    Ratio of Performance to InterQuartile distance
                        (RPIQ)
runn_mean               Running mean of a vector
runn_mean_pred          Prediction based on a running mean
save_temperature_scenarios
                        Save temperature scenarios generated with
                        temperature_generation
select_by_file_extension
                        Select string that end in a particular way
                        (e.g. a certain file extension)
stack_hourly_temps      Stacking of hourly temperatures
stage_transitions       Compute what it takes to advance through
                        development stages
step_model              Calculation of cumulative temperature metric
                        according to a user-defined stepwise weight
                        function
StepChill_Wrapper       StepChill_Wrapper
summary.bootstrap_phenologyFit
                        summary.bootstrap_phenologyFit
summary.phenologyFit    summary phenologyFit
temperature_generation
                        Generation of synthetic temperature records
temperature_scenario_baseline_adjustment
                        Make temperature scenario relative to a
                        particular baseline
temperature_scenario_from_records
                        Make monthly temperature scenario from historic
                        records
tempResponse            Calculation of climatic metrics from hourly
                        temperature records
tempResponse_daily_list
                        Calculation of climatic metrics from lists of
                        daily temperature records
tempResponse_hourtable
                        Add metric accumulation to table of hourly
                        temperatures
test_if_equal           Test if all character vectors in a string are
                        equal
UniChill_Wrapper        UniChill_Wrapper
UnifiedModel_Wrapper    UnifiedModel_Wrapper
UniForce_Wrapper        UniForce_Wrapper
Utah_Model              Calculation of cumulative chill according to
                        the Utah Model
VIP                     Calculate VIP scores for PLS regression
weather2chillR          Convert downloaded weather to chillR format
Winters_hours_gaps      Hourly temperature data sample
YEARMODA2Date           YEARMODA to Date conversion
