ash                     Adaptive Shrinkage
ash_pois                Performs adaptive shrinkage on Poisson data
ashci                   Credible Interval Computation for the ash
                        object
ashr                    ashr
calc_loglik             Compute loglikelihood for data from ash fit
calc_logLR              Compute loglikelihood ratio for data from ash
                        fit
calc_mixmean            Generic function of calculating the overall
                        mean of the mixture
calc_mixsd              Generic function of calculating the overall
                        standard deviation of the mixture
calc_null_loglik        Compute loglikelihood for data under null that
                        all beta are 0
calc_null_vloglik       Compute vector of loglikelihood for data under
                        null that all beta are 0
calc_vloglik            Compute vector of loglikelihood for data from
                        ash fit
calc_vlogLR             Compute vector of loglikelihood ratio for data
                        from ash fit
cdf_conv                cdf_conv
cdf_post                cdf_post
cdf.ash                 cdf method for ash object
comp_cdf                Generic function of computing the cdf for each
                        component
comp_cdf_conv           comp_cdf_conv
comp_cdf_conv.normalmix
                        comp_cdf_conv.normalmix
comp_cdf_conv.unimix    cdf of convolution of each component of a unif
                        mixture
comp_cdf_post           comp_cdf_post
comp_dens               Generic function of calculating the component
                        densities of the mixture
comp_dens_conv          comp_dens_conv
comp_dens_conv.normalmix
                        comp_dens_conv.normalmix
comp_dens_conv.unimix   density of convolution of each component of a
                        unif mixture
comp_mean               Generic function of calculating the first
                        moment of components of the mixture
comp_mean.normalmix     comp_mean.normalmix
comp_mean.tnormalmix    comp_mean.tnormalmix
comp_mean2              Generic function of calculating the second
                        moment of components of the mixture
comp_postmean           comp_postmean
comp_postmean2          comp_postmean2
comp_postprob           comp_postprob
comp_postsd             comp_postsd
comp_sd                 Generic function to extract the standard
                        deviations of components of the mixture
comp_sd.normalmix       comp_sd.normalmix
comp_sd.tnormalmix      comp_sd.normalmix
compute_lfsr            Function to compute the local false sign rate
cxxMixSquarem           Brief description of function.
dens                    Find density at y, a generic function
dens_conv               dens_conv
dlogf                   The log-F distribution
estimate_mixprop        Estimate mixture proportions of a mixture g
                        given noisy (error-prone) data from that
                        mixture.
gen_etruncFUN           gen_etruncFUN
get_density             Density method for ash object
get_lfsr                Return lfsr from an ash object
get_post_sample         Sample from posterior
igmix                   Constructor for igmix class
lik_binom               Likelihood object for Binomial error
                        distribution
lik_logF                Likelihood object for logF error distribution
lik_normal              Likelihood object for normal error distribution
lik_normalmix           Likelihood object for normal mixture error
                        distribution
lik_pois                Likelihood object for Poisson error
                        distribution
lik_t                   Likelihood object for t error distribution
log_comp_dens_conv      log_comp_dens_conv
log_comp_dens_conv.normalmix
                        log_comp_dens_conv.normalmix
log_comp_dens_conv.unimix
                        log density of convolution of each component of
                        a unif mixture
loglik_conv             loglik_conv
loglik_conv.default     loglik_conv.default
mixcdf                  mixcdf
mixcdf.default          mixcdf.default
mixEM                   Estimate mixture proportions of a mixture model
                        by EM algorithm
mixIP                   Estimate mixture proportions of a mixture model
                        by Interior Point method
mixmean2                Generic function of calculating the overall
                        second moment of the mixture
mixprop                 Generic function of extracting the mixture
                        proportions
mixSQP                  Estimate mixture proportions of a mixture model
                        using mix-SQP algorithm.
mixVBEM                 Estimate posterior distribution on mixture
                        proportions of a mixture model by a Variational
                        Bayes EM algorithm
my_e2truncbeta          second moment of truncated Beta distribution
my_e2truncgamma         second moment of truncated gamma distribution
my_e2truncnorm          Expected Squared Value of Truncated Normal
my_e2trunct             my_e2trunct
my_etruncbeta           mean of truncated Beta distribution
my_etruncgamma          mean of truncated gamma distribution
my_etrunclogf           my_etrunclogf
my_etruncnorm           Expected Value of Truncated Normal
my_etrunct              my_etrunct
my_vtruncnorm           Variance of Truncated Normal
ncomp                   ncomp
ncomp.default           ncomp.default
normalmix               Constructor for normalmix class
pcdf_post               pcdf_post
plogf                   The log-F distribution
plot_diagnostic         Diagnostic plots for ash object
plot.ash                Plot method for ash object
pm_on_zero              Generic function to extract which components of
                        mixture are point mass on 0
post_sample             post_sample
post_sample.normalmix   post_sample.normalmix
post_sample.unimix      post_sample.unimix
posterior_dist          Compute Posterior
postmean                postmean
postmean2               postmean2
postsd                  postsd
print.ash               Print method for ash object
prune                   prune
qval.from.lfdr          Function to compute q values from local false
                        discovery rates
set_data                Takes raw data and sets up data object for use
                        by ash
summary.ash             Summary method for ash object
tnormalmix              Constructor for tnormalmix class
unimix                  Constructor for unimix class
vcdf_post               vcdf_post
w_mixEM                 Estimate mixture proportions of a mixture model
                        by EM algorithm (weighted version)
